fix: Handle transposed flow cell format in Biacore Insight parser#1199
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Files from newer Biacore Insight Evaluation software (v3.0.12+) use a
transposed layout where flow cell data appears as "Flow cell N" row
sections instead of a flat columnar table. The "Run name" attribute
within these sections falsely matched the run-detection predicate
`startswith("Run")`, causing a spurious "multiple runs" error.
Tighten the run-header regex to only match "Run \d+" and add logic to
transpose the new "Flow cell N" sections into the tabular format the
downstream code expects.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
ajcariaga16
approved these changes
May 18, 2026
nathan-stender
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May 19, 2026
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Summary
startswith("Run")was matching "Run name" attribute rows within flow cell sections — tightened to regexRun \d+$Context
Files with v3.0.12+ triggered:
The file actually contained a single run — the error was caused by "Run name" rows in the Properties sheet falsely matching the run-splitting logic.
Test plan
Biacore_Insight_Transposed_FlowCells.xlsx) covers the transposed format🤖 Generated with Claude Code